Search results for "Registry of Standard Biological Parts"

showing 3 items of 3 documents

The Software Crisis of Synthetic Biology

2016

In fifteen years, Synthetic Biology (SB) has moved from proof-of-concept designs to several flagship achievements. Standardisation efforts are still under way, basic engineering concepts such as modularity and orthogonality are still controversial in biology, and making predictions from computer models is still unreliable. A deep characterization in the pattern of re-use of biological blocks in SB has not been attempted to date. We have compared the topological organisation of two different technological networks, one associated to a standard, large-scale software repository and the second provided by the Registry of Standard Biological Parts (RSBP). Our results strongly suggest that softwa…

0303 health sciencesOrthogonality (programming)Computer scienceSystems biologyComplex system02 engineering and technologyBioinformaticsData science03 medical and health sciencesSynthetic biologySoftware crisis020204 information systems0202 electrical engineering electronic engineering information engineeringRegistry of Standard Biological PartsSoftware repository030304 developmental biology
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The iGEM Competition

2014

The international Genetically Engineered Machine (iGEM) competition is a well-known example of synthetic biology and a workbench for the development of heterodox, multidisciplinary and frontier work made by undergraduate students. We review the origin, organization and structure of the competition; we describe how an iGEM team can be set in place, and briefly summarize some of the main milestones and challenges of a competition that is only one decade old. We discuss the links of the competition with the Registry of Standard Biological Parts and the flagship role of iGEM as a very trench of the synthetic biology revolution.

Competition (economics)EngineeringSynthetic biologybusiness.industryInternational Genetically Engineered MachineWorld championshipRegistry of Standard Biological PartsEngineering ethicsbusinessSynthetic construct
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Standards not that standard

2015

There is a general assent on the key role of standards in Synthetic Biology. In two consecutive letters to this journal, suggestions on the assembly methods for the Registry of standard biological parts have been described. We fully agree with those authors on the need of a more flexible building strategy and we highlight in the present work two major functional challenges standardization efforts have to deal with: the need of both universal and orthogonal behaviors. We provide experimental data that clearly indicate that such engineering requirements should not be taken for granted in Synthetic Biology. Electronic supplementary material The online version of this article (doi:10.1186/s1303…

Environmental EngineeringStandardizationOrthogonality (programming)Requirements engineeringComputer scienceBiomedical EngineeringExperimental dataCell BiologyData scienceStandardizationSynthetic biologyWork (electrical)Key (cryptography)Registry of Standard Biological PartsBiobrick partsOrthogonalityLetters to the EditorMolecular BiologySynthetic biologyJournal of Biological Engineering
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